FastQCFastQC Report
Mon 22 May 2023
EGAF00007846548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19418877
Sequences flagged as poor quality0
Sequence length54
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGAT361490.186153916109567No Hit
GTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC335020.1725228498022826No Hit
CCTGTATCCTAGGCTACACACTGAGGACTCTGTTCCTCCCCTTTCCGCCTAGGG235520.12128404747607185No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC231800.11936838572076028No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACG205390.10576821718372284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)