FastQCFastQC Report
Mon 22 May 2023
EGAF00007846551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12650245
Sequences flagged as poor quality0
Sequence length54
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCAT1732311.369388498009327No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA512800.40536764307726847No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATC443880.35088648480721124No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGACAAGAACGATCAT254680.2013241640774546No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT242060.19134807270531123No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGCTGG169680.13413178954241597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)