FastQCFastQC Report
Fri 10 May 2024
EGAF00007846585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21975146
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length54
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG393600.17911143798544046No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA328640.14955076976507914No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG237750.10819040747215057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)