FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007846602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10348654
Sequences flagged as poor quality0
Sequence length54
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1088151.0514894014236054No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT253210.24467916310662238No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC135440.13087692370428078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)