FastQCFastQC Report
Thu 9 May 2024
EGAF00007846603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10348654
Total Bases558.8 Mbp
Sequences flagged as poor quality0
Sequence length54
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3477473.360311398951013No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA352680.3407979433847146No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG140010.1352929569391343No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC107790.10415847316955422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)