FastQCFastQC Report
Wed 8 May 2024
EGAF00007848558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007848558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15594380
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC24

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC789690.506393970135395TruSeq Adapter, Index 6 (100% over 50bp)

[OK]Adapter Content

Adapter graph