FastQCFastQC Report
Thu 9 May 2024
EGAF00007849707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007849707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3340176
Total Bases250.5 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG58180.1741824382906769No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG38570.11547295711363713No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCG34510.10331790899641216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)