FastQCFastQC Report
Wed 8 May 2024
EGAF00007849715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007849715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3203806
Total Bases240.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG53640.1674258678584159No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG34850.1087768735060737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)