FastQCFastQC Report
Wed 8 May 2024
EGAF00007852573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007852573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4321159
Total Bases436.4 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC228270.528261052185305Illumina Single End Sequencing Primer (100% over 31bp)
CTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTT61730.14285519232224503No Hit
TCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGT57210.13239503568371355No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACC48480.11219212253008971No Hit
CCAAATAAAGTATAGGCGATAGAAATTGAAACCTGGCGCAATAGATATAG44070.10198652722568183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)