FastQCFastQC Report
Wed 8 May 2024
EGAF00007852599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007852599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3371014
Total Bases340.4 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC232990.6911570227830558Illumina Single End PCR Primer 1 (96% over 33bp)
CTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTT39680.11770938951899933No Hit
GGAAACGGAGCAGGTCAAAACTCCCGTGCTGATCAGTAGTGGGATCGCGC38450.11406063576122794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)