FastQCFastQC Report
Wed 8 May 2024
EGAF00007852601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007852601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3309679
Total Bases334.2 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC227910.6886166301928375Illumina Single End PCR Primer 1 (96% over 33bp)
CTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTT39950.12070657003292465No Hit
GGAAACGGAGCAGGTCAAAACTCCCGTGCTGATCAGTAGTGGGATCGCGC37670.11381768443404934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)