FastQCFastQC Report
Thu 9 May 2024
EGAF00007852603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007852603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3435820
Total Bases347 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC188930.5498832884144106Illumina Single End PCR Primer 1 (96% over 33bp)
CTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTT39750.11569290591474525No Hit
GGAAACGGAGCAGGTCAAAACTCCCGTGCTGATCAGTAGTGGGATCGCGC37910.11033756133906898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)