FastQCFastQC Report
Fri 10 May 2024
EGAF00007854851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007854851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18450175
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG344640.18679497619941274No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG289000.15663808066861154No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC234410.127050285430897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)