FastQCFastQC Report
Fri 10 May 2024
EGAF00007854855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007854855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18712534
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG337660.180445897920613No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG283680.15159892294651275No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC223110.11923024428439248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)