FastQCFastQC Report
Fri 10 May 2024
EGAF00007854907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007854907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17727580
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT240250.13552329195524712No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC212330.11977382135632726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)