FastQCFastQC Report
Sat 11 May 2024
EGAF00007855407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007855407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24230645
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG558890.23065419843343007No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT448710.1851828541914588No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC290840.12002982174019716No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA276500.11411169615996603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)