FastQCFastQC Report
Wed 8 May 2024
EGAF00007855831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007855831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6656893
Total Bases672.3 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACTCGTGTGTGTAGATCTC224520.3372744612238773Illumina Single End PCR Primer 1 (96% over 32bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC129990.19527127745631484No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG114150.17147639296590766No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA75480.11338622988231897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)