FastQCFastQC Report
Fri 10 May 2024
EGAF00007855833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007855833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6563032
Total Bases662.8 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACTCGTGTGTGTAGATCTC228400.34800988323689414Illumina Single End PCR Primer 1 (96% over 32bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC127650.19449851836773002No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG112710.1717346494729875No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA76040.11586108371862272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)