FastQCFastQC Report
Wed 8 May 2024
EGAF00007857386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007857386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3085748
Total Bases231.4 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG44860.1453780412399198No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT43910.1422993711735372No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG39640.1284615594014806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)