FastQCFastQC Report
Thu 9 May 2024
EGAF00007857388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007857388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4620297
Total Bases346.5 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG67780.14670052596185915No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT63540.13752362672789217No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG61270.13261052265687684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)