FastQCFastQC Report
Wed 8 May 2024
EGAF00007857402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007857402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4474424
Total Bases335.5 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG64460.1440632358489048No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT60580.1353917286336744No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG56060.125289869712839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)