FastQCFastQC Report
Thu 9 May 2024
EGAF00007857406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007857406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4484191
Total Bases336.3 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG63720.14209921031463646No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT59600.13291137687935237No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG54700.12198409925000965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)