FastQCFastQC Report
Wed 8 May 2024
EGAF00007857975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007857975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3285695
Total Bases246.4 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC82010.2495971172004705No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG66160.20135770362130384No Hit
ATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGC34400.10469626669547843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)