FastQCFastQC Report
Wed 8 May 2024
EGAF00007857985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007857985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4991309
Total Bases374.3 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC132200.2648603803130602No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG95680.1916932011221906No Hit
ATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGC51560.10329955528699986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)