FastQCFastQC Report
Wed 8 May 2024
EGAF00007860443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007860443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5509301
Total Bases413.1 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC116210.210934200182564No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA60100.10908824912634106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)