FastQCFastQC Report
Wed 8 May 2024
EGAF00007860461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007860461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5167645
Total Bases387.5 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC103790.20084583983613424No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA53010.10258057587160109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)