FastQCFastQC Report
Wed 8 May 2024
EGAF00007860499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007860499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4504850
Total Bases337.8 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC78080.17332430602572782No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT46420.10304449648711944No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA45060.10002552804199917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)