FastQCFastQC Report
Wed 8 May 2024
EGAF00007863631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007863631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3863793
Total Bases289.7 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC90600.23448461136504986No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT51310.13279696919581355No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG42430.10981437152559673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)