FastQCFastQC Report
Thu 9 May 2024
EGAF00007864335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007864335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5035791
Total Bases377.6 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG77670.15423594823534176No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA66320.13169728449810564No Hit
ATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGC51400.10206936705673447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)