FastQCFastQC Report
Wed 8 May 2024
EGAF00007864337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007864337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4791751
Total Bases359.3 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG74750.15599725444832171No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA64300.13418894262243594No Hit
ATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGC49600.10351122168075928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)