FastQCFastQC Report
Wed 8 May 2024
EGAF00007865279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007865279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3830245
Total Bases386.8 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC291380.7607346266361551Illumina Single End PCR Primer 1 (96% over 32bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC81490.21275401442988634No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG39910.10419699000977743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)