FastQCFastQC Report
Wed 8 May 2024
EGAF00007867896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007867896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3742392
Total Bases280.6 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG57030.15238916714229828No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA50010.13363111079758616No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT38290.10231424180043137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)