FastQCFastQC Report
Thu 9 May 2024
EGAF00007867900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007867900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3529269
Total Bases264.6 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG55960.1585597470751025No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA53480.15153279616827167No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT35470.10050239865535893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)