FastQCFastQC Report
Wed 8 May 2024
EGAF00007868739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007868739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4957675
Total Bases371.8 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG69800.14079180260908591No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT49620.1000872384736797No Hit
ATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGC49580.10000655549224181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)