FastQCFastQC Report
Wed 8 May 2024
EGAF00007868747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007868747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4923235
Total Bases369.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG70830.14386881796217324No Hit
ATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGC50180.10192485225669708No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT49410.1003608399761539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)