FastQCFastQC Report
Thu 9 May 2024
EGAF00007869197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4623281
Total Bases346.7 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA56620.12246713967850971No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCG49410.1068721542125603No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT48680.10529318897120898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)