FastQCFastQC Report
Thu 9 May 2024
EGAF00007869199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4645045
Total Bases348.3 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA56130.12083844182349149No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCG52860.11379868225173276No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT49620.10682350763017365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)