FastQCFastQC Report
Wed 8 May 2024
EGAF00007869483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3881555
Total Bases392 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC47790.1231207595924829No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA46150.11889564877993483No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA42130.10853897471503045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)