FastQCFastQC Report
Wed 8 May 2024
EGAF00007869485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3851280
Total Bases388.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA45510.11816850501651399No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC45160.11725971625018176No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA41650.10814586319353564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)