FastQCFastQC Report
Wed 8 May 2024
EGAF00007869493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3774271
Total Bases381.2 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA45270.11994369243755947No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC45020.11928131286810088No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA42680.11308144009796858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)