FastQCFastQC Report
Thu 9 May 2024
EGAF00007869497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3524785
Total Bases356 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA44170.12531260771933606No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC42740.12125562268336934No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA39300.11149616217726754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)