FastQCFastQC Report
Thu 9 May 2024
EGAF00007869501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3903249
Total Bases394.2 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA48710.12479347333465018No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC47350.1213091965180802No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA47240.12102738001085761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)