FastQCFastQC Report
Wed 8 May 2024
EGAF00007869507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3956079
Total Bases399.5 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC49380.12482056096453079No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA48870.12353140571763103No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA48340.1221916953630097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)