FastQCFastQC Report
Thu 9 May 2024
EGAF00007869511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007869511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3908140
Total Bases394.7 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC49410.12642842886897604No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA48290.12356261546413383No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA47730.12212970876171274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)