FastQCFastQC Report
Thu 9 May 2024
EGAF00007873493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007873493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3087647
Total Bases231.5 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA32990.10684511539045753No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT32900.10655363129269634No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA31710.10269956377785414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)