FastQCFastQC Report
Thu 9 May 2024
EGAF00007873510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007873510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3026975
Total Bases227 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA43080.14232030327306966No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG30870.10198300283286119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)