FastQCFastQC Report
Thu 9 May 2024
EGAF00007873517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007873517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2930401
Total Bases219.7 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA30880.10537806941780324No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT30270.10329644304653185No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA30030.10247744250701525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)