FastQCFastQC Report
Wed 8 May 2024
EGAF00007873523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007873523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3036500
Total Bases227.7 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA32410.1067347274822987No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT31690.10436357648608595No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA31530.10383665404248311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)