FastQCFastQC Report
Fri 10 May 2024
EGAF00007882085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007882085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4288680
Total Bases433.1 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC152820.35633341727524553Illumina Single End Sequencing Primer (100% over 31bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC73040.17030881296809275No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG57250.13349095759068058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)