FastQCFastQC Report
Wed 8 May 2024
EGAF00007884109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007884109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2912320
Total Bases294.1 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT78090.2681367432150313No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC35760.12278870453796287No Hit
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC32130.11032441489946158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)